PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 38997
Common NameSELMODRAFT_28982, SELMODRAFT_38997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ZF-HD
Protein Properties Length: 72aa    MW: 7882.78 Da    PI: 6.0772
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
38997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.74.4e-31256360
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                 +vrY+eClkNhAa +Ggha+DGCgEfmp+++   + ++++C AC+CHRnFHRreve e
        38997  2 AVRYRECLKNHAAGIGGHALDGCGEFMPNKE---DESSMRCGACDCHRNFHRREVEGE 56
                 69**************************944...469*****************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-18256IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-27353IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-28453IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.522552IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
KAVRYRECLK NHAAGIGGHA LDGCGEFMPN KEDESSMRCG ACDCHRNFHR REVEGEKPIC  60
DLCKEDDGTA GG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977930.19e-47hypothetical protein SELMODRAFT_38997, partial
RefseqXP_002986957.19e-47hypothetical protein SELMODRAFT_28982, partial
SwissprotO647226e-23ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLD8S3H51e-46D8S3H5_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ212683e-46(Selaginella moellendorffii)
STRINGEFJ120393e-46(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-24homeobox protein 21
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]